NeuronC User's Manual: Index
NeuronC: A neural circuit simulation language
User's Manual Version 6.5
Mar, 2024
Robert G. Smith
Department of Neuroscience
University of Pennsylvania School of Medicine
Philadelphia, PA 19104-6058
USA
All Rights Reserved. Copyright (C) 2024.
- An article describing NeuronC
NeuronC: a computational language for investigating functional architecture
of neural circuits (published in J. Neurosci Meth. (1992)
43:83-108.
How to run NeuronC without reading the Manual.
1) Boot UNIX on your personal computer either
from the hard disk (the Linux partition must be active for
this to work) or from a Linux boot floppy. Login with
either your name if you have a login or someone else's name
if you don't have one.
2) With Linux running in the computer, type "nc".
This will run the NeuronC program.
3) Type in the following lines:
connect 1 to 2 cable length=200 dia=0.2;
stim node 1 vclamp= -.01 start=.01 dur=.001;
plot V[1],V[2];
This describes a passive neural cable with a transient
voltage clamp on one end and recording sites at both ends.
4) Type "run;" and the model will run. NeuronC prints out a
list of times and voltage or current records according to
the plot commands you give it.
5) To give a graphics display, start with the command
"ncv". This is a symbolic link to "nc". To display
graphics with NeuronC, the computer should have either
X Windows or a VGA compatible display card.
6) You have successfully run NeuronC.